Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs4919017 | chr10:98189070 | C/T | 8.69E-6 | 407 | 15.63 | 11.67 | 0 | KM Plot |
| LGG | rs4939524 | chr11:61226651 | G/A | 7.86E-5 | 407 | 16.68 | 17.67 | 14.5 | KM Plot |
| LGG | rs494356 | chr11:117071970 | T/C | 1.3E-9 | 401 | 1.83 | 19.07 | 14.53 | KM Plot |
| LGG | rs4947526 | chr7:55905401 | G/A | 0 | 402 | 15.2 | 16.08 | 3.77 | KM Plot |
| LGG | rs4947527 | chr7:55966684 | C/T | 1.74E-10 | 405 | 15.2 | 15.93 | 7.8 | KM Plot |
| LGG | rs4947531 | chr7:55993895 | C/T | 1.53E-10 | 405 | 15.3 | 15.93 | 7.8 | KM Plot |
| LGG | rs4948078 | chr7:55902729 | T/A | 0 | 403 | 15.18 | 16.08 | 3.77 | KM Plot |
| LGG | rs4948087 | chr7:55993976 | C/T | 1.62E-10 | 405 | 15.3 | 16.23 | 7.8 | KM Plot |
| LGG | rs4948089 | chr7:55996162 | A/G | 1.53E-10 | 405 | 15.3 | 15.93 | 7.8 | KM Plot |
| LGG | rs4949830 | chr1:78498082 | T/C | 3.73E-7 | 406 | 3.93 | 11.1 | 15.72 | KM Plot |
| LGG | rs4956034 | chr4:108944846 | C/T | 3.32E-5 | 407 | 15.6 | 14.93 | 4.35 | KM Plot |
| LGG | rs4965005 | chr12:132422718 | C/T | 0.000214 | 407 | 7.93 | 14.85 | 16.73 | KM Plot |
| LGG | rs4979754 | chr10:64048959 | G/A | 0.000116 | 399 | 12.17 | 15.63 | 15.88 | KM Plot |
| LGG | rs4979780 | chr10:63992740 | A/C | 0.000155 | 407 | 12.17 | 15.47 | 15.88 | KM Plot |
| LGG | rs4979782 | chr10:63998527 | C/T | 0.000155 | 407 | 12.17 | 15.47 | 15.88 | KM Plot |